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Atomistic simulation of the Coupled adsorption and unfolding of protein GB1 on the polystyrenes nanoparticle surface

机译:蛋白质偶联吸附和解折叠的原子模拟   GB4在聚苯乙烯纳米粒子表面上

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摘要

Protein adsorption/desorption upon nanoparticle surfaces is an importantprocess to understand for developing new nanotechnology involving biomaterials,while atomistic picture of the process and its coupling with proteinconformational change is lacking. Here we report our study on the adsorption ofprotein GB1 upon a polystyrene nanoparticle surface using atomistic moleculardynamic simulations. Enabled by metadynamics, we explored the relevant phasespace and identified three protein states; each protein state involved both theadsorbed and desorbed states. We also studied the change of secondary andtertiary structures of GB1 during adsorption, and the dominant interactionsbetween protein and surface in different adsorbing stages. From the simulationresults we obtained a scenario that is more rational and complete than theconventional one. We believe the new scenario is more appropriate as atheoretical model in understanding and explaining experimental signals.Introduction
机译:蛋白质在纳米粒子表面的吸附/解吸是开发涉及生物材料的新型纳米技术的重要过程,而缺乏对该过程的原子性描述及其与蛋白质构象变化的耦合。在这里,我们使用原子分子动力学模拟报告我们对蛋白质GB1在聚苯乙烯纳米颗粒表面的吸附研究。通过元动力学,我们探索了相关的相空间并确定了三种蛋白质状态。每个蛋白质状态都涉及吸附和解吸状态。我们还研究了GB1在吸附过程中二级和三级结构的变化,以及在不同吸附阶段蛋白质与表面之间的主要相互作用。通过仿真结果,我们得出了比传统场景更加合理,完整的场景。我们认为,新场景更适合作为理论模型来理解和解释实验信号。

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